IL_2ZJP_054

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAC*GACG

Length

7 nucleotides

Bulged bases

2ZJP|1|X|C|1575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_054 not in the Motif Atlas

Homologous match to IL_7A0S_052

Geometric discrepancy: 0.1325

The information below is about IL_7A0S_052

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_38565.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

2ZJP|1|X|U|1447
2ZJP|1|X|A|1448
2ZJP|1|X|C|1449
*
2ZJP|1|X|G|1573
2ZJP|1|X|A|1574
2ZJP|1|X|C|1575
2ZJP|1|X|G|1576

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains