IL_2ZJP_062

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAA*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_062 not in the Motif Atlas

Homologous match to IL_4WF9_063

Geometric discrepancy: 0.1668

The information below is about IL_4WF9_063

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.2

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

11

Unit IDs

2ZJP|1|X|U|1680
2ZJP|1|X|A|1681
2ZJP|1|X|A|1682
*
2ZJP|1|X|U|1978
2ZJP|1|X|C|1979
2ZJP|1|X|A|1980

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain H

50S RIBOSOMAL PROTEIN L14

Chain M

50S RIBOSOMAL PROTEIN L19