IL_2ZJP_065

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GAAGAAG

Length

13 nucleotides

Bulged bases

2ZJP|1|X|G|1716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_065 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.1045

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2ZJP|1|X|C|1703
2ZJP|1|X|G|1704
2ZJP|1|X|U|1705
2ZJP|1|X|A|1706
2ZJP|1|X|A|1707
2ZJP|1|X|C|1708
*
2ZJP|1|X|G|1713
2ZJP|1|X|A|1714
2ZJP|1|X|A|1715
2ZJP|1|X|G|1716
2ZJP|1|X|A|1717
2ZJP|1|X|A|1718
2ZJP|1|X|G|1719

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains