IL_2ZJP_074

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2ZJP|1|X|A|1921, 2ZJP|1|X|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_074 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1868

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2ZJP|1|X|C|1917
2ZJP|1|X|G|1918
2ZJP|1|X|A|1919
2ZJP|1|X|A|1920
2ZJP|1|X|A|1921
2ZJP|1|X|U|1922
2ZJP|1|X|U|1923
2ZJP|1|X|C|1924
2ZJP|1|X|C|1925
2ZJP|1|X|U|1926
2ZJP|1|X|U|1927
2ZJP|1|X|G|1928
*
2ZJP|1|X|C|1944
2ZJP|1|X|C|1945
2ZJP|1|X|U|1946
2ZJP|1|X|G|1947

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains