IL_2ZJP_079

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

2ZJP|1|X|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_079 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.1414

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

2ZJP|1|X|U|2064
2ZJP|1|X|A|2065
2ZJP|1|X|G|2066
*
2ZJP|1|X|C|2215
2ZJP|1|X|G|2216
2ZJP|1|X|G|2217
2ZJP|1|X|G|2218

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2

Chain U

50S RIBOSOMAL PROTEIN L28