IL_2ZJP_089

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_089 not in the Motif Atlas

Homologous match to IL_7A0S_086

Geometric discrepancy: 0.1048

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

2ZJP|1|X|A|2438
2ZJP|1|X|U|2439
2ZJP|1|X|C|2440
*
2ZJP|1|X|G|2468
2ZJP|1|X|G|2469
2ZJP|1|X|U|2470
2ZJP|1|X|U|2471
2ZJP|1|X|U|2472

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L16