IL_2ZJP_091

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

2ZJP|1|X|G|2555, 2ZJP|1|X|A|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_091 not in the Motif Atlas

Geometric match to IL_4WF9_095

Geometric discrepancy: 0.12

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

2ZJP|1|X|C|2489
2ZJP|1|X|U|2490
2ZJP|1|X|C|2491
*
2ZJP|1|X|G|2553
2ZJP|1|X|C|2554
2ZJP|1|X|G|2555
2ZJP|1|X|A|2556
2ZJP|1|X|G|2557

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain Y

50S RIBOSOMAL PROTEIN L32