IL_2ZJP_099

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUG*CACAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_099 not in the Motif Atlas

Geometric match to IL_5VSU_002

Geometric discrepancy: 0.3732

The information below is about IL_5VSU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2ZJP|1|X|C|2674
2ZJP|1|X|U|2675
2ZJP|1|X|G|2676
*
2ZJP|1|X|C|2689
2ZJP|1|X|A|2690
2ZJP|1|X|C|2691
2ZJP|1|X|A|2692
2ZJP|1|X|U|2693
2ZJP|1|X|G|2694

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L17

Chain M

50S RIBOSOMAL PROTEIN L19