IL_2ZJP_103

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGCACG*UUCAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_103 not in the Motif Atlas

Homologous match to IL_7A0S_101

Geometric discrepancy: 0.0974

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

2ZJP|1|X|U|2822
2ZJP|1|X|G|2823
2ZJP|1|X|C|2824
2ZJP|1|X|A|2825
2ZJP|1|X|C|2826
2ZJP|1|X|G|2827
*
2ZJP|1|X|U|2840
2ZJP|1|X|U|2841
2ZJP|1|X|C|2842
2ZJP|1|X|A|2843
2ZJP|1|X|G|2844

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L17

Chain M

50S RIBOSOMAL PROTEIN L19