IL_2ZJP_108
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UCG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_2ZJP_108 not in the Motif Atlas
- Homologous match to IL_7A0S_107
- Geometric discrepancy: 0.1544
- The information below is about IL_7A0S_107
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_71625.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 95
Unit IDs
2ZJP|1|Z|U|82
2ZJP|1|Z|C|83
2ZJP|1|Z|G|84
*
2ZJP|1|Z|C|97
2ZJP|1|Z|C|98
2ZJP|1|Z|G|99
Current chains
- Chain Z
- RIBOSOMAL 5S RNA
Nearby chains
- Chain J
- 50S RIBOSOMAL PROTEIN L16
- Chain S
- 50S RIBOSOMAL PROTEIN L25
- Chain W
- 50S RIBOSOMAL PROTEIN L30
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: