IL_2ZJP_113
3D structure
- PDB id
- 2ZJP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CUCAGUGGUUAAG*CGAAAAUGAUCGGGGCUCAAG
- Length
- 34 nucleotides
- Bulged bases
- 2ZJP|1|X|U|1037, 2ZJP|1|X|A|1138, 2ZJP|1|X|U|1141, 2ZJP|1|X|C|1152
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
2ZJP|1|X|C|1029
2ZJP|1|X|U|1030
2ZJP|1|X|C|1031
2ZJP|1|X|A|1032
2ZJP|1|X|G|1033
2ZJP|1|X|U|1034
2ZJP|1|X|G|1035
2ZJP|1|X|G|1036
2ZJP|1|X|U|1037
2ZJP|1|X|U|1038
2ZJP|1|X|A|1039
2ZJP|1|X|A|1040
2ZJP|1|X|G|1041
*
2ZJP|1|X|C|1135
2ZJP|1|X|G|1136
2ZJP|1|X|A|1137
2ZJP|1|X|A|1138
2ZJP|1|X|A|1139
2ZJP|1|X|A|1140
2ZJP|1|X|U|1141
2ZJP|1|X|G|1142
2ZJP|1|X|A|1143
2ZJP|1|X|U|1144
2ZJP|1|X|C|1145
2ZJP|1|X|G|1146
2ZJP|1|X|G|1147
2ZJP|1|X|G|1148
2ZJP|1|X|G|1149
2ZJP|1|X|C|1150
2ZJP|1|X|U|1151
2ZJP|1|X|C|1152
2ZJP|1|X|A|1153
2ZJP|1|X|A|1154
2ZJP|1|X|G|1155
Current chains
- Chain X
- RIBOSOMAL 23S RNA
Nearby chains
- Chain 4
- 50S RIBOSOMAL PROTEIN L36
- Chain B
- 50S RIBOSOMAL PROTEIN L3
- Chain E
- 50S RIBOSOMAL PROTEIN L6
- Chain G
- 50S RIBOSOMAL PROTEIN L13
- Chain J
- 50S RIBOSOMAL PROTEIN L16
- Chain Z
- 5S ribosomal RNA; 5S rRNA
Coloring options: