IL_2ZJP_116

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCGAG*CGAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_116 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3014

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.3

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

2ZJP|1|X|G|2328
2ZJP|1|X|C|2329
2ZJP|1|X|G|2330
2ZJP|1|X|A|2331
2ZJP|1|X|G|2332
*
2ZJP|1|X|C|2343
2ZJP|1|X|G|2344
2ZJP|1|X|A|2345
2ZJP|1|X|G|2346
2ZJP|1|X|C|2347

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35

Chain T

50S RIBOSOMAL PROTEIN L27