IL_2ZJP_118

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CU*ACAUG

Length

7 nucleotides

Bulged bases

2ZJP|1|X|C|2691, 2ZJP|1|X|A|2692, 2ZJP|1|X|U|2693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_118 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.1711

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

2ZJP|1|X|C|2674
2ZJP|1|X|U|2675
*
2ZJP|1|X|A|2690
2ZJP|1|X|C|2691
2ZJP|1|X|A|2692
2ZJP|1|X|U|2693
2ZJP|1|X|G|2694

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L17

Chain M

50S RIBOSOMAL PROTEIN L19