IL_2ZJR_007

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85647.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2ZJR|1|X|G|215
2ZJR|1|X|U|216
2ZJR|1|X|U|217
2ZJR|1|X|A|218
2ZJR|1|X|G|219
2ZJR|1|X|U|220
2ZJR|1|X|A|221
2ZJR|1|X|G|222
*
2ZJR|1|X|C|230
2ZJR|1|X|G|231
2ZJR|1|X|A|232
2ZJR|1|X|A|233
2ZJR|1|X|C|234
2ZJR|1|X|C|235
2ZJR|1|X|C|236

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain I

50S ribosomal protein L15