IL_2ZJR_009

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GAAC*GAGUGAAAGAGAAC

Length

18 nucleotides

Bulged bases

2ZJR|1|X|G|514, 2ZJR|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02359.2

Basepair signature

cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2ZJR|1|X|G|492
2ZJR|1|X|A|493
2ZJR|1|X|A|494
2ZJR|1|X|C|495
*
2ZJR|1|X|G|506
2ZJR|1|X|A|507
2ZJR|1|X|G|508
2ZJR|1|X|U|509
2ZJR|1|X|G|510
2ZJR|1|X|A|511
2ZJR|1|X|A|512
2ZJR|1|X|A|513
2ZJR|1|X|G|514
2ZJR|1|X|A|515
2ZJR|1|X|G|516
2ZJR|1|X|A|517
2ZJR|1|X|A|518
2ZJR|1|X|C|519

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain R

50S ribosomal protein L24