IL_2ZJR_043

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CGGAGAAG*UGGAG

Length

13 nucleotides

Bulged bases

2ZJR|1|X|A|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65553.4

Basepair signature

cWW-tSH-tWH-cWW-tSH-tHS-tSS-tSS-R-cWW

Number of instances in this motif group

22

Unit IDs

2ZJR|1|X|C|1221
2ZJR|1|X|G|1222
2ZJR|1|X|G|1223
2ZJR|1|X|A|1224
2ZJR|1|X|G|1225
2ZJR|1|X|A|1226
2ZJR|1|X|A|1227
2ZJR|1|X|G|1228
*
2ZJR|1|X|U|1247
2ZJR|1|X|G|1248
2ZJR|1|X|G|1249
2ZJR|1|X|A|1250
2ZJR|1|X|G|1251

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22