IL_2ZJR_045

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

AUGAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85647.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2ZJR|1|X|A|1275
2ZJR|1|X|U|1276
2ZJR|1|X|G|1277
2ZJR|1|X|A|1278
2ZJR|1|X|G|1279
2ZJR|1|X|U|1280
2ZJR|1|X|A|1281
2ZJR|1|X|A|1282
*
2ZJR|1|X|U|1994
2ZJR|1|X|G|1995
2ZJR|1|X|A|1996
2ZJR|1|X|A|1997
2ZJR|1|X|A|1998
2ZJR|1|X|U|1999
2ZJR|1|X|U|2000

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32