IL_2ZJR_050

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24982.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

2ZJR|1|X|U|1370
2ZJR|1|X|G|1371
2ZJR|1|X|A|1372
2ZJR|1|X|G|1373
2ZJR|1|X|G|1374
*
2ZJR|1|X|C|1383
2ZJR|1|X|G|1384
2ZJR|1|X|C|1385
2ZJR|1|X|A|1386
2ZJR|1|X|G|1387

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2

Chain U

50S ribosomal protein L28