IL_2ZJR_073

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2ZJR|1|X|A|1921, 2ZJR|1|X|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75688.1

Basepair signature

cWW-L-R-R-L-L-L-cSH-L-L-cWW

Number of instances in this motif group

1

Unit IDs

2ZJR|1|X|C|1917
2ZJR|1|X|G|1918
2ZJR|1|X|A|1919
2ZJR|1|X|A|1920
2ZJR|1|X|A|1921
2ZJR|1|X|U|1922
2ZJR|1|X|U|1923
2ZJR|1|X|C|1924
2ZJR|1|X|C|1925
2ZJR|1|X|U|1926
2ZJR|1|X|U|1927
2ZJR|1|X|G|1928
*
2ZJR|1|X|C|1944
2ZJR|1|X|C|1945
2ZJR|1|X|U|1946
2ZJR|1|X|G|1947

Current chains

Chain X

ribosomal 23S RNA

Nearby chains