IL_2ZJR_088

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87904.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

31

Unit IDs

2ZJR|1|X|C|2445
2ZJR|1|X|C|2446
2ZJR|1|X|G|2447
2ZJR|1|X|A|2448
2ZJR|1|X|G|2449
*
2ZJR|1|X|C|2459
2ZJR|1|X|G|2460
2ZJR|1|X|G|2461
2ZJR|1|X|C|2462
2ZJR|1|X|G|2463

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain J

50S ribosomal protein L16