IL_2ZJR_106

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CAAUGAUAC*GAAAAGUCG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25230.2

Basepair signature

cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2ZJR|1|Y|C|73
2ZJR|1|Y|A|74
2ZJR|1|Y|A|75
2ZJR|1|Y|U|76
2ZJR|1|Y|G|77
2ZJR|1|Y|A|78
2ZJR|1|Y|U|79
2ZJR|1|Y|A|80
2ZJR|1|Y|C|81
*
2ZJR|1|Y|G|100
2ZJR|1|Y|A|101
2ZJR|1|Y|A|102
2ZJR|1|Y|A|103
2ZJR|1|Y|A|104
2ZJR|1|Y|G|105
2ZJR|1|Y|U|106
2ZJR|1|Y|C|107
2ZJR|1|Y|G|108

Current chains

Chain Y

ribosomal 5S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25

Chain X

Large subunit ribosomal RNA; LSU rRNA