IL_2ZJR_115

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CUGA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJR_115 not in the Motif Atlas

Homologous match to IL_5J7L_336

Geometric discrepancy: 0.3308

The information below is about IL_5J7L_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2ZJR|1|X|C|2435
2ZJR|1|X|U|2436
2ZJR|1|X|G|2437
2ZJR|1|X|A|2438
*
2ZJR|1|X|U|2472
2ZJR|1|X|G|2473
2ZJR|1|X|G|2474

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16