IL_2ZJR_116

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GG*UGC

Length

5 nucleotides

Bulged bases

2ZJR|1|X|G|2854

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJR_116 not in the Motif Atlas

Homologous match to IL_7A0S_099

Geometric discrepancy: 0.1031

The information below is about IL_7A0S_099

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

2ZJR|1|X|G|2813
2ZJR|1|X|G|2814
*
2ZJR|1|X|U|2853
2ZJR|1|X|G|2854
2ZJR|1|X|C|2855

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain K

50S ribosomal protein L17