IL_30QZ_041

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

30QZ|1|a|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_30QZ_041 not in the Motif Atlas

Homologous match to IL_7A0S_041

Geometric discrepancy: 0.143

The information below is about IL_7A0S_041

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

30QZ|1|a|C|1196
30QZ|1|a|G|1197
30QZ|1|a|U|1198
*
30QZ|1|a|A|1247
30QZ|1|a|G|1248
30QZ|1|a|U|1249
30QZ|1|a|G|1250

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15

Chain p

Large ribosomal subunit protein bL20