IL_30QZ_071

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_30QZ_071 not in the Motif Atlas

Homologous match to IL_7A0S_068

Geometric discrepancy: 0.3892

The information below is about IL_7A0S_068

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.4

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

30QZ|1|a|G|1846
30QZ|1|a|A|1847
30QZ|1|a|A|1848
30QZ|1|a|G|1849
*
30QZ|1|a|C|1893
30QZ|1|a|C|1894

Current chains

Chain a

23S rRNA

Nearby chains

Chain V

Heat shock protein 15

Chain c

Large ribosomal subunit protein uL2