IL_30RB_066

3D structure

PDB id

30RB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_30RB_066 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.2176

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

30RB|1|a|C|274
30RB|1|a|C|275
30RB|1|a|U|276
30RB|1|a|G|277
30RB|1|a|A|278
30RB|1|a|A|279
30RB|1|a|U|280
30RB|1|a|C|281
*
30RB|1|a|G|359
30RB|1|a|U|360
30RB|1|a|G|361
30RB|1|a|A|362
30RB|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains