IL_354D_001

3D structure

PDB id

354D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of loop E FROM E. coli 5S RRNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.5 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

354D|1|A|C|71
354D|1|A|G|72
354D|1|A|A|73
354D|1|A|U|74
354D|1|A|G|75
354D|1|A|G|76
354D|1|A|U|77
354D|1|A|A|78
354D|1|A|G|79
*
354D|1|B|C|97
354D|1|B|G|98
354D|1|B|A|99
354D|1|B|G|100
354D|1|B|A|101
354D|1|B|G|102
354D|1|B|U|103
354D|1|B|A|104
354D|1|B|DG|105

Current chains

Chain A

RNA (5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*G)-3')

Chain B

RNA-DNA (5'-R(*GP*CP*GP*AP*GP*AP*GP*UP*AP*)-D(*DGP(S)*)-R(*GP*C)-3')

Nearby chains