IL_357D_003
3D structure
- PDB id
- 357D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.5 A structure of fragment I from E. coli 5S RRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_357D_003 not in the Motif Atlas
- Geometric match to IL_364D_003
- Geometric discrepancy: 0.0981
- The information below is about IL_364D_003
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
357D|1|B|C|71
357D|1|B|G|72
357D|1|B|A|73
357D|1|B|U|74
357D|1|B|G|75
357D|1|B|G|76
357D|1|B|U|77
357D|1|B|A|78
357D|1|B|G|79
*
357D|1|C|C|97
357D|1|C|G|98
357D|1|C|A|99
357D|1|C|G|100
357D|1|C|A|101
357D|1|C|G|102
357D|1|C|U|103
357D|1|C|A|104
357D|1|C|G|105
Current chains
- Chain B
- RNA (5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*GP*UP*GP*GP*GP*G*UP*C)-3')
- Chain C
- RNA (5'-R(*CP*CP*CP*CP*AP*UP*GP*CP*GP*AP*GP*AP*GP*UP*AP*GP*G P*GP*AP*AP*CP*UP* GP*CP*CP*AP*GP*GP*CP*AP*U)-3')
Nearby chains
- Chain A
- RNA-DNA (5'-R(*UP*GP*DCP)-D(*CP(S)*)-R(*UP*GP*GP*CP*GP*GP*C)-3')
Coloring options: