IL_359D_001

3D structure

PDB id

359D (explore in PDB, NAKB, or RNA 3D Hub)

Description

INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGUGCUGAUGAG*ACCACGUAAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62947.1

Basepair signature

cWW-cWW-cWW-R-cWW-R-cWW-R-cWW-R-L-tSH-L-L-L-L

Number of instances in this motif group

1

Unit IDs

359D|1|A|U|21
359D|1|A|G|22
359D|1|A|G|23
359D|1|A|U|24
359D|1|A|G|25
359D|1|A|C|30
359D|1|A|U|40
359D|1|A|G|50
359D|1|A|A|60
359D|1|A|U|70
359D|1|A|G|80
359D|1|A|A|90
359D|1|A|G|101
*
359D|1|B|A|11
359D|1|B|C|12
359D|1|B|C|13
359D|1|B|A|14
359D|1|B|C|15
359D|1|B|G|31|||L
359D|1|B|U|32|||L
359D|1|B|A|33|||L
359D|1|B|A|34|||L
359D|1|B|C|111

Current chains

Chain A

RNA HAMMERHEAD RIBOZYME

Chain B

RNA HAMMERHEAD RIBOZYME

Nearby chains