IL_364D_001

3D structure

PDB id

364D (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

C(1SC)(1SC)U*AGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_27521.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

1

Unit IDs

364D|1|A|C|3
364D|1|A|1SC|4||B
364D|1|A|1SC|4||A
364D|1|A|U|5
*
364D|1|C|A|115
364D|1|C|G|116
364D|1|C|G|117

Current chains

Chain A

RNA (5'-R(*UP*GP*)-D(*(1SC)P*)-R(*CP*UP*GP*GP*CP*GP*GP*C)-3')

Chain C

RNA (5'-R(*CP*CP*CP*CP*AP*UP*GP*CP*GP*AP*GP*AP*GP*UP*AP*GP*G P*GP*AP*AP*CP*UP*GP*CP*CP*AP*GP*GP*CP*AP*U)-3')

Nearby chains