IL_38JD_001

3D structure

PDB id

38JD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA polymerase ribozyme 85h34 replication complex, subclass 2 structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

AGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_38JD_001 not in the Motif Atlas

Geometric match to IL_9H3G_111

Geometric discrepancy: 0.2288

The information below is about IL_9H3G_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84227.2

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

38JD|1|A|A|-10
38JD|1|A|G|-9
38JD|1|A|G|-8
*
38JD|1|A|C|-3
38JD|1|A|C|-2
38JD|1|A|U|-1

Current chains

Chain A

RNA polymerase ribozyme 85h34

Nearby chains