IL_38JD_002

3D structure

PDB id

38JD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA polymerase ribozyme 85h34 replication complex, subclass 2 structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

38JD|1|A|C|37

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_38JD_002 not in the Motif Atlas

Geometric match to IL_8F5G_002

Geometric discrepancy: 0.1503

The information below is about IL_8F5G_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

72

Unit IDs

38JD|1|A|G|36
38JD|1|A|C|37
38JD|1|A|C|38
*
38JD|1|A|G|102
38JD|1|A|C|103

Current chains

Chain A

RNA polymerase ribozyme 85h34

Nearby chains

Chain C

RNA template

Chain B

RNA primer