IL_38JD_003
3D structure
- PDB id
- 38JD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNA polymerase ribozyme 85h34 replication complex, subclass 2 structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.92 Å
Loop
- Sequence
- CGAAC*GACCUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_38JD_003 not in the Motif Atlas
- Geometric match to IL_6FZ0_002
- Geometric discrepancy: 0.3466
- The information below is about IL_6FZ0_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12409.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
38JD|1|A|C|111
38JD|1|A|G|112
38JD|1|A|A|113
38JD|1|A|A|114
38JD|1|A|C|115
*
38JD|1|A|G|123
38JD|1|A|A|124
38JD|1|A|C|125
38JD|1|A|C|126
38JD|1|A|U|127
38JD|1|A|G|128
Current chains
- Chain A
- RNA polymerase ribozyme 85h34
Nearby chains
- Chain C
- RNA template
Coloring options: