IL_38JD_004

3D structure

PDB id

38JD (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA polymerase ribozyme 85h34 replication complex, subclass 2 structure

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GUA*UC

Length

5 nucleotides

Bulged bases

38JD|1|A|U|140

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_38JD_004 not in the Motif Atlas

Geometric match to IL_9H3G_059

Geometric discrepancy: 0.132

The information below is about IL_9H3G_059

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.8

Basepair signature

cWW-L-cWW

Number of instances in this motif group

192

Unit IDs

38JD|1|A|G|139
38JD|1|A|U|140
38JD|1|A|A|141
*
38JD|1|A|U|149
38JD|1|A|C|150

Current chains

Chain A

RNA polymerase ribozyme 85h34

Nearby chains