IL_3B5F_002
3D structure
- PDB id
- 3B5F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of a Minimally Hinged Hairpin Ribozyme Incorporating the Ade38Dap Mutation and a 2',5' Phosphodiester Linkage at the Active Site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGAAACAC*GGU(N6G)CAUUACC
- Length
- 20 nucleotides
- Bulged bases
- 3B5F|1|C|C|39
- QA status
- Modified nucleotides: N6G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3B5F_002 not in the Motif Atlas
- Geometric match to IL_2P7E_001
- Geometric discrepancy: 0.0444
- The information below is about IL_2P7E_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60797.2
- Basepair signature
- cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3B5F|1|B|G|19
3B5F|1|B|A|20
3B5F|1|B|G|21
3B5F|1|B|A|22
3B5F|1|B|A|23
3B5F|1|B|A|24
3B5F|1|B|C|25
3B5F|1|B|A|26
3B5F|1|B|C|27
*
3B5F|1|C|G|35
3B5F|1|C|G|36
3B5F|1|C|U|37
3B5F|1|C|N6G|38
3B5F|1|C|C|39
3B5F|1|C|A|40
3B5F|1|C|U|41
3B5F|1|C|U|42
3B5F|1|C|A|43
3B5F|1|C|C|44
3B5F|1|C|C|45
Current chains
- Chain B
- 29-mer Loop A and Loop B Ribozyme strand
- Chain C
- Loop B S-turn strand
Nearby chains
- Chain A
- Loop A Substrate strand
Coloring options: