IL_3BBM_001

3D structure

PDB id

3BBM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Minimally Junctioned Hairpin Ribozyme Incorporates A38C and 2'O-Me Modification at Active Site

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

C(A2M)GUCC*GAGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80926.1

Basepair signature

cWW-cWW-tSH-tHS-L-cWW

Number of instances in this motif group

7

Unit IDs

3BBM|1|A|C|4
3BBM|1|A|A2M|5
3BBM|1|A|G|6
3BBM|1|A|U|7
3BBM|1|A|C|8
3BBM|1|A|C|9
*
3BBM|1|B|G|6
3BBM|1|B|A|7
3BBM|1|B|G|8
3BBM|1|B|A|9
3BBM|1|B|A|10
3BBM|1|B|G|11

Current chains

Chain A

Loop A Substrate strand

Chain B

Loop A and Loop B Ribozyme strand

Nearby chains

Chain C

Loop B S-turn strand