IL_3BNR_002

3D structure

PDB id

3BNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the presence of nonspecifically bound paromomycin (A1555G mutant, Br-derivative)

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

CACC*GCAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BNR_002 not in the Motif Atlas

Geometric match to IL_3BNR_008

Geometric discrepancy: 0.0773

The information below is about IL_3BNR_008

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

3BNR|1|A|C|7
3BNR|1|A|A|8
3BNR|1|A|C|9
3BNR|1|A|C|10
*
3BNR|1|B|G|14
3BNR|1|B|C|15
3BNR|1|B|A|16
3BNR|1|B|A|17
3BNR|1|B|G|18

Current chains

Chain A

A site of human mitochondrial ribosome, chain one

Chain B

A site of human mitochondrial ribosome, chain two

Nearby chains

Chain C

A site of human mitochondrial ribosome, chain one

Chain D

A site of human mitochondrial ribosome, chain three