IL_3C3Z_002

3D structure

PDB id

3C3Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin

Experimental method

X-RAY DIFFRACTION

Resolution

1.5 Å

Loop

Sequence

GAAG*CAC

Length

7 nucleotides

Bulged bases

3C3Z|1|A|A|8, 3C3Z|1|A|A|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3C3Z|1|A|G|7
3C3Z|1|A|A|8
3C3Z|1|A|A|9
3C3Z|1|A|G|10
*
3C3Z|1|B|C|15
3C3Z|1|B|A|16
3C3Z|1|B|C|17

Current chains

Chain A

HIV-1 subtype F genomic RNA

Chain B

HIV-1 subtype F genomic RNA

Nearby chains