IL_3CC2_009

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

3CC2|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CC2_009 not in the Motif Atlas

Homologous match to IL_4V9F_009

Geometric discrepancy: 0.0261

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

3CC2|1|0|A|248
3CC2|1|0|G|249
*
3CC2|1|0|C|260
3CC2|1|0|A|261
3CC2|1|0|A|262
3CC2|1|0|U|263
3CC2|1|0|G|264
3CC2|1|0|U|265

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain F

50S ribosomal protein L7Ae

Chain M

50S ribosomal protein L15e