3D structure

PDB id
3CC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
CGAAC*GCAUAG
Length
11 nucleotides
Bulged bases
3CC2|1|0|U|1625
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CC2_055 not in the Motif Atlas
Homologous match to IL_4V9F_056
Geometric discrepancy: 0.0662
The information below is about IL_4V9F_056
Detailed Annotation
tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_62654.1
Basepair signature
cWW-tSH-tHH-tHS-cWW
Number of instances in this motif group
1

Unit IDs

3CC2|1|0|C|1570
3CC2|1|0|G|1571
3CC2|1|0|A|1572
3CC2|1|0|A|1573
3CC2|1|0|C|1574
*
3CC2|1|0|G|1622
3CC2|1|0|C|1623
3CC2|1|0|A|1624
3CC2|1|0|U|1625
3CC2|1|0|A|1626
3CC2|1|0|G|1627

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

No other chains within 10Å

Coloring options:


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