3D structure

PDB id
3CC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal Structure of Anisomycin Bound to the 50S Ribosomal Subunit
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GUACC*GAGGCGAAAUAGAGC
Length
20 nucleotides
Bulged bases
3CC4|1|0|U|510, 3CC4|1|0|G|514
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CC4_014 not in the Motif Atlas
Geometric match to IL_4V9F_014
Geometric discrepancy: 0.0322
The information below is about IL_4V9F_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31504.1
Basepair signature
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
1

Unit IDs

3CC4|1|0|G|487
3CC4|1|0|U|488
3CC4|1|0|A|489
3CC4|1|0|C|490
3CC4|1|0|C|491
*
3CC4|1|0|G|501
3CC4|1|0|A|502
3CC4|1|0|G|503
3CC4|1|0|G|504
3CC4|1|0|C|505
3CC4|1|0|G|506
3CC4|1|0|A|507
3CC4|1|0|A|508
3CC4|1|0|A|509
3CC4|1|0|U|510
3CC4|1|0|A|511
3CC4|1|0|G|512
3CC4|1|0|A|513
3CC4|1|0|G|514
3CC4|1|0|C|515

Current chains

Chain 0
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L39e
Chain R
50S ribosomal protein L22P
Chain T
50S ribosomal protein L24P

Coloring options:


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