IL_3CCJ_087

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCAAG*CGACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCJ_087 not in the Motif Atlas

Homologous match to IL_4V9F_085

Geometric discrepancy: 0.0983

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

3CCJ|1|0|G|2501
3CCJ|1|0|C|2502
3CCJ|1|0|A|2503
3CCJ|1|0|A|2504
3CCJ|1|0|G|2505
*
3CCJ|1|0|C|2515
3CCJ|1|0|G|2516
3CCJ|1|0|A|2517
3CCJ|1|0|C|2518
3CCJ|1|0|C|2519

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain H

50S ribosomal protein L10e