IL_3CCJ_116

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAUUCGG*CUGUC

Length

14 nucleotides

Bulged bases

3CCJ|1|0|G|2033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCJ_116 not in the Motif Atlas

Homologous match to IL_4V9F_111

Geometric discrepancy: 0.0592

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

3CCJ|1|0|G|1744
3CCJ|1|0|G|1745
3CCJ|1|0|A|1746
3CCJ|1|0|A|1747
3CCJ|1|0|U|1748
3CCJ|1|0|U|1749
3CCJ|1|0|C|1750
3CCJ|1|0|G|1751
3CCJ|1|0|G|1752
*
3CCJ|1|0|C|2031
3CCJ|1|0|U|2032
3CCJ|1|0|G|2033
3CCJ|1|0|U|2034
3CCJ|1|0|C|2035

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P