IL_3CCJ_117

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGU*ACAG

Length

7 nucleotides

Bulged bases

3CCJ|1|0|A|2637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCJ_117 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.2501

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

3CCJ|1|0|C|2626
3CCJ|1|0|G|2627
3CCJ|1|0|U|2628
*
3CCJ|1|0|A|2635
3CCJ|1|0|C|2636
3CCJ|1|0|A|2637
3CCJ|1|0|G|2638

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P