IL_3CCM_039

3D structure

PDB id

3CCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3CCM|1|0|U|1109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCM_039 not in the Motif Atlas

Geometric match to IL_4V9F_039

Geometric discrepancy: 0.0484

The information below is about IL_4V9F_039

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

3CCM|1|0|G|1108
3CCM|1|0|U|1109
3CCM|1|0|G|1110
*
3CCM|1|0|C|1253
3CCM|1|0|C|1254

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain J

50S ribosomal protein L13P

Chain W

50S ribosomal protein L30P