IL_3CCM_049

3D structure

PDB id

3CCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCM_049 not in the Motif Atlas

Homologous match to IL_4V9F_050

Geometric discrepancy: 0.0513

The information below is about IL_4V9F_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

3CCM|1|0|G|1416
3CCM|1|0|G|1417
3CCM|1|0|U|1418
3CCM|1|0|U|1419
*
3CCM|1|0|A|1678
3CCM|1|0|C|1679

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e

Chain S

50S ribosomal protein L23P