IL_3CCM_066

3D structure

PDB id

3CCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UG*UCAA

Length

6 nucleotides

Bulged bases

3CCM|1|0|C|1940, 3CCM|1|0|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCM_066 not in the Motif Atlas

Homologous match to IL_4V9F_067

Geometric discrepancy: 0.0664

The information below is about IL_4V9F_067

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

3CCM|1|0|U|1897
3CCM|1|0|G|1898
*
3CCM|1|0|U|1939
3CCM|1|0|C|1940
3CCM|1|0|A|1941
3CCM|1|0|A|1942

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P