IL_3CCM_109

3D structure

PDB id

3CCM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2611U

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GGAAUUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3CCM_109 not in the Motif Atlas

Homologous match to IL_4V9F_111

Geometric discrepancy: 0.0546

The information below is about IL_4V9F_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

3CCM|1|0|G|1744
3CCM|1|0|G|1745
3CCM|1|0|A|1746
3CCM|1|0|A|1747
3CCM|1|0|U|1748
3CCM|1|0|U|1749
3CCM|1|0|C|1750
3CCM|1|0|G|1751
3CCM|1|0|G|1752
*
3CCM|1|0|C|2031
3CCM|1|0|U|2032
3CCM|1|0|G|2033
3CCM|1|0|U|2034
3CCM|1|0|C|2035

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L14P