3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UUAGUAA*UGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CCQ_007 not in the Motif Atlas
Homologous match to IL_4V9F_007
Geometric discrepancy: 0.0289
The information below is about IL_4V9F_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

3CCQ|1|0|U|210
3CCQ|1|0|U|211
3CCQ|1|0|A|212
3CCQ|1|0|G|213
3CCQ|1|0|U|214
3CCQ|1|0|A|215
3CCQ|1|0|A|216
*
3CCQ|1|0|U|224
3CCQ|1|0|G|225
3CCQ|1|0|A|226
3CCQ|1|0|A|227
3CCQ|1|0|C|228
3CCQ|1|0|G|229

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain 3
50S ribosomal protein L44E
Chain L
50S ribosomal protein L15P
Chain M
50S ribosomal protein L15e

Coloring options:


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