3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUCUCAUC*GUGCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3CCQ_011 not in the Motif Atlas
Homologous match to IL_4V9F_011
Geometric discrepancy: 0.4375
The information below is about IL_4V9F_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

3CCQ|1|0|C|280
3CCQ|1|0|U|281
3CCQ|1|0|C|282
3CCQ|1|0|U|283
3CCQ|1|0|C|284
3CCQ|1|0|A|285
3CCQ|1|0|U|286
3CCQ|1|0|C|287
*
3CCQ|1|0|G|365
3CCQ|1|0|U|366
3CCQ|1|0|G|367
3CCQ|1|0|C|368
3CCQ|1|0|G|369

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain M
50S ribosomal protein L15e

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1176 s